# ENCODE Toolkit

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

- Weekly downloads: 139
- GitHub stars: 21
- Health: active
- Repository: https://github.com/ammawla/encode-toolkit
- Registry names: io.github.ammawla/encode-toolkit
- Categories: Search & knowledge, Dev tools & GitHub
- Snapshot: 2026-10-14

## Install

```sh
npx -y encode-toolkit
uvx encode-toolkit
```

```json
{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}
```

Source: https://mcpmorning.com/mcp/ammawla-encode-toolkit/